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    Author information
    First name: Can
    Last name: Alkan
    DBLP: a/CanAlkan
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    Conference paper
    Hongyi Xin, Sunny Nahar, Richard Zhu, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu.
    Optimal seed solver: optimizing seed selection in read mapping.
    Bioinformatics 2016, Volume 32 (0) 2016
    Journal article
    Mohammed Alser, Hasan Hassan, Hongyi Xin, Oguz Ergin, Onur Mutlu, Can Alkan.
    GateKeeper: Enabling Fast Pre-Alignment in DNA Short Read Mapping with a New Streaming Accelerator Architecture.
    CoRR 2016, Volume 0 (0) 2016
    Journal article
    Hongyi Xin, Richard Zhu, Sunny Nahar, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu.
    Optimal Seed Solver: Optimizing Seed Selection in Read Mapping.
    CoRR 2015, Volume 0 (0) 2015
    Conference paper
    Hongyi Xin, John Greth, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu.
    Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.
    Bioinformatics 2015, Volume 31 (0) 2015
    Journal article
    Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan.
    Accelerating read mapping with FastHASH.
    BMC Genomics 2013, Volume 14 (0) 2013
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